Publicly available Sorghum RNA-seq data
Links to genome browser SRA References
Response to osmotic stress and ABA SRP007361 Dugas DV, et al. BMC Genomics. 2011
Comparative transcriptomics SRP008469 Davidson RM, et al. Plant Journal. 2012
Infected by Bipolaris sorghicola DRP000393 Mizuno H, et al. BMC Plant Biol. 2012
Infected by Bipolaris sorghicola DRP000986 Yazawa T, et al. PLoS ONE. 2013
Nitrogen stress tolerance SRP036640 Gelli M, et al. BMC Genomics. 2014
Cut stress DRP001330 Mizuno H, et al. BMC Res Notes. 2014
Mizuno H, et al. Front Plant Sci. 2016
Panicle, Seed, Stem PRJDB3280
Shimada S, et al. DNA Research. 2015
Makita Y, et al. PCP. 2015
Intact, Lodged DRP001334 Mizino H, et al. BMC Plant Biol. 2018
Leaf, Panicle, Peduncle, Root
Seed, Shoots, Stem, Internode
McCormick RF, et al. Plant J. 2018
RNA-seq, ChIP-seq and ATAC-seq SRP188687 Lu Z, et al. Nature Plants 2019

Genome Browser

Links to our 5' and 3' end of full-length cDNA sequences and three RNA-seq data (panicle, seed and stem). If you want to see all available data at the same time, go to "Select Tracke" tab and check all options

In this database, we show our original full-length cDNA ESTs of about 40,000 clones and RNA-Seq data of triplicated three samples: spikelets, seeds and stems. Additionally, we also prepare publicly available Sorghum bicolor BTx623 RNA-Seq data. Users can access and compare various trascriptome data from this site.

Sanger full-length cDNA ESTs

We constructed a mixed full-length cDNA library from eight time points of whole body in Sorghum bicolor (L.) Moench, and obtained 39,791 high quality expressed sequence tags (ESTs) .

Growth condition : on the soil

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