Gene annotation
Transcriptome id Sobic.004G163700.1
Synonym SBE2.2, Sb04g021540
Functional annotation 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
UniProt B3TSN8 , B3TSP3 , B3TT16 , B3TSP2 , B3TSP0 , B3TTH4 , B3TTK2 , B3TTN4 , B3TST4 , B3TTB4 , B3TT81 , B3TSY8 , B3TT93 , B3TTA0 , B3TT92 , B3TTE8 , B3TTH0 , B3TTH3 , B3TT48 , B3TSP1 , B3TTD4 , B3TT49 , B3TT11 , B3TSP6 , B3TST6 , B3TTG7 , B3TT84 , B3TT50 , C5XTD4 , Q7XZK8 , B3TT41 , B3TT04 , B3TTN5 , B3TSQ7 , B3TTN3 , B3TSZ6 , B3TTM3 , B3TTM0 , B3TTG0 , B3TT60 , Q7XZK7 , B3TSU0 , B3TST7 , B3TTE9 , B3TSY2 , B3TTG5 , B3TTL5 , B3TT09 , B3TSQ1 , B3TSN7 , B3TTB2 , B3TSP8 , B3TTA2 , A5Y3A5 , B3TSS6 , B3TTH2 , B3TT97 , B3TT72 , B3TT33 , A5Y3F3 , B3TSN6 , B3TTF8 , B3TSR8 , A5Y3H2 , B3TT76 , A5Y3F2 , B3TT75 , B3TSQ4
Pfam PF00128 PF02922 PF02806
Panther DB PTHR10357 PTHR10357:SF174
NCBI CDD -
KEGG Orthology K00700; GBE1, 1,4-alpha-glucan branching enzyme
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G03650 : starch branching enzyme 2.2
RAP-DB (Rice) LOC_Os02g32660.1 : 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011553 , Zm00025a020527
Brachypodium KQJ99703 , KQJ82480 , KQJ99702
Barley HORVU2Hr1G072500.1 , HORVU2Hr1G072500.2 , HORVU2Hr1G072500.3 , HORVU2Hr1G072500.4 , HORVU2Hr1G072500.5 , HORVU2Hr1G072500.6 , HORVU2Hr1G072500.7 , HORVU2Hr1G072500.8 , HORVU2Hr1G072500.9 , HORVU2Hr1G077120.9 , HORVU2Hr1G077120.8 , HORVU2Hr1G077120.1 , HORVU2Hr1G077120.3 , HORVU2Hr1G077120.2 , HORVU2Hr1G077120.5 , HORVU2Hr1G077120.4 , HORVU2Hr1G077120.7 , HORVU2Hr1G077120.6 , HORVU2Hr1G072500.23 , HORVU2Hr1G072500.22 , HORVU2Hr1G072500.21 , HORVU2Hr1G072500.20 , HORVU2Hr1G072500.27 , HORVU2Hr1G072500.26 , HORVU2Hr1G072500.25 , HORVU2Hr1G072500.24 , HORVU2Hr1G072500.28 , HORVU2Hr1G072500.30 , HORVU2Hr1G072500.31 , HORVU2Hr1G072500.32 , HORVU2Hr1G072500.33 , HORVU2Hr1G072500.34 , HORVU2Hr1G072500.35 , HORVU2Hr1G072500.36 , HORVU2Hr1G072500.37 , HORVU2Hr1G077120.14 , HORVU2Hr1G077120.11 , HORVU2Hr1G077120.10 , HORVU2Hr1G077120.13 , HORVU2Hr1G077120.12 , HORVU2Hr1G072500.18 , HORVU2Hr1G072500.19 , HORVU2Hr1G072500.12 , HORVU2Hr1G072500.13 , HORVU2Hr1G072500.10 , HORVU2Hr1G072500.11 , HORVU2Hr1G072500.16 , HORVU2Hr1G072500.17 , HORVU2Hr1G072500.14 , HORVU2Hr1G072500.15
Wheat TraesCS2A02G293400 , TraesCS2A02G293400 , TraesCS2B02G327300 , TraesCS2B02G327300 , TraesCS2B02G327300 , TraesCS2B02G327300 , TraesCS2D02G290800 , TraesCS2A02G310300 , TraesCS2A02G310300 , TraesCS2A02G310300 , TraesCS2D02G308600 , TraesCS2D02G308600 , TraesCS2B02G309500 , TraesCS2B02G309500 , TraesCS2B02G309500 , TraesCS2D02G290800 , TraesCS2D02G290800 , TraesCS2D02G290800
Populus -


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cDNA sequences
Sobic.004G163700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194100 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.006G015800 1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
3 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
4 Sobic.001G425900 EDM2, putative, expressed -
5 Sobic.006G046300 histidine kinase, putative, expressed -
6 Sobic.007G041200 cytochrome P450, putative, expressed -
7 Sobic.003G092600 seven in absentia protein family protein, expressed -
8 Sobic.010G273800 starch biosynthesis, 1,4-alpha-glucan branching enzyme(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
9 Sobic.001G083900 alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
10 Sobic.004G322901 - -
11 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
12 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
13 Sobic.007G126000 - -
14 Sobic.005G083280 - -
15 Sobic.008G116100 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
16 Sobic.007G068200 starch synthase III, putative, expressed -
17 Sobic.002G286800 MATE efflux protein, putative, expressed -
18 Sobic.004G339900 expressed protein -
19 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
20 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain


Gene co-expression network
sample Sobic004G163700 Sobic004G163700 Sobic001G194100 Sobic001G194100 Sobic004G163700--Sobic001G194100 Sobic006G015800 Sobic006G015800 Sobic004G163700--Sobic006G015800 Sobic004G262100 Sobic004G262100 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic007G041200 Sobic007G041200 Sobic004G163700--Sobic007G041200 Sobic003G092600 Sobic003G092600 Sobic004G163700--Sobic003G092600 Sobic010G273800 Sobic010G273800 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900 Sobic003G062101 Sobic003G062101 Sobic001G194100--Sobic003G062101 Sobic001G194100--Sobic004G163700 Sobic003G042200 Sobic003G042200 Sobic001G194100--Sobic003G042200 Sobic004G065800 Sobic004G065800 Sobic001G194100--Sobic004G065800 Sobic008G174500 Sobic008G174500 Sobic001G194100--Sobic008G174500 Sobic001G194100--Sobic004G262100 Sobic004G339900 Sobic004G339900 Sobic001G194100--Sobic004G339900 Sobic002G420400 Sobic002G420400 Sobic001G194100--Sobic002G420400 Sobic002G354800 Sobic002G354800 Sobic001G194100--Sobic002G354800 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic004G322901 Sobic004G322901 Sobic006G015800--Sobic004G322901 Sobic001G371600 Sobic001G371600 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic002G015800 Sobic002G015800 Sobic004G262100--Sobic002G015800 Sobic004G262100--Sobic003G092600 Sobic001G324800 Sobic001G324800 Sobic004G262100--Sobic001G324800 Sobic001G509100 Sobic001G509100 Sobic004G262100--Sobic001G509100 Sobic002G360900 Sobic002G360900 Sobic004G262100--Sobic002G360900 Sobic001G261529 Sobic001G261529 Sobic004G262100--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic004G262100--Sobic005G083280 Sobic003G101200 Sobic003G101200 Sobic004G262100--Sobic003G101200 Sobic010G022600 Sobic010G022600 Sobic004G262100--Sobic010G022600 Sobic010G118200 Sobic010G118200 Sobic001G425900--Sobic010G118200 Sobic006G271400 Sobic006G271400 Sobic001G425900--Sobic006G271400 Sobic009G033500 Sobic009G033500 Sobic001G425900--Sobic009G033500 Sobic010G058000 Sobic010G058000 Sobic001G425900--Sobic010G058000 Sobic002G101200 Sobic002G101200 Sobic001G425900--Sobic002G101200 Sobic002G166800 Sobic002G166800 Sobic001G425900--Sobic002G166800 Sobic010G209300 Sobic010G209300 Sobic001G425900--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic001G425900--Sobic006G031000 Sobic007G091200 Sobic007G091200 Sobic001G425900--Sobic007G091200 Sobic006G161300 Sobic006G161300 Sobic006G046300--Sobic006G161300 Sobic010G047300 Sobic010G047300 Sobic006G046300--Sobic010G047300 Sobic005G033600 Sobic005G033600 Sobic006G046300--Sobic005G033600 Sobic005G176875 Sobic005G176875 Sobic006G046300--Sobic005G176875 Sobic006G046300--Sobic002G101200 Sobic006G046300--Sobic005G032500 Sobic002G015400 Sobic002G015400 Sobic006G046300--Sobic002G015400 Sobic006G046300--Sobic002G172200 Sobic006G046300--Sobic001G425900 Sobic008G116100 Sobic008G116100 Sobic007G041200--Sobic008G116100 Sobic007G041200--Sobic009G033500 Sobic010G084800 Sobic010G084800 Sobic007G041200--Sobic010G084800 Sobic007G041200--Sobic010G047300 Sobic002G097601 Sobic002G097601 Sobic007G041200--Sobic002G097601 Sobic006G186300 Sobic006G186300 Sobic007G041200--Sobic006G186300 Sobic007G041200--Sobic007G091200 Sobic008G109600 Sobic008G109600 Sobic007G041200--Sobic008G109600 Sobic010G060100 Sobic010G060100 Sobic007G041200--Sobic010G060100 Sobic003G092600--Sobic002G015800 Sobic003G092600--Sobic005G083280 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic003G092600--Sobic001G509100 Sobic010G273800--Sobic006G015800 Sobic010G273800--Sobic003G092600 Sobic010G273800--Sobic004G262100 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic002G104300 Sobic002G104300 Sobic001G083900--Sobic002G104300 Sobic001G083900--Sobic001G425900 Sobic001G083900--Sobic010G273800 Sobic001G083900--Sobic004G163700 Sobic009G013200 Sobic009G013200 Sobic001G083900--Sobic009G013200 Sobic003G213100 Sobic003G213100 Sobic001G083900--Sobic003G213100 Sobic003G412200 Sobic003G412200 Sobic001G083900--Sobic003G412200 Sobic007G204600 Sobic007G204600 Sobic001G083900--Sobic007G204600 Sobic005G003100 Sobic005G003100 Sobic001G083900--Sobic005G003100
Octagon: transcription factors


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