Gene annotation
Transcriptome id Sobic.006G066800.2
Synonym SBE2.2, Sb06g015360
Functional annotation 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
UniProt A0A1Z5RCK4
Pfam PF00128 PF02922 PF02806
Panther DB PTHR10357 PTHR10357:SF141
NCBI CDD -
KEGG Orthology K00700; GBE1, 1,4-alpha-glucan branching enzyme
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G03650 : starch branching enzyme 2.2
RAP-DB (Rice) LOC_Os02g32660.1 : 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011553 , Zm00025a055990 , Zm00025a052564 , Zm00025a020527
Brachypodium KQJ99703 , KQJ82480 , KQJ99702
Barley HORVU2Hr1G072500.1 , HORVU2Hr1G072500.2 , HORVU2Hr1G072500.3 , HORVU2Hr1G072500.4 , HORVU2Hr1G072500.5 , HORVU2Hr1G072500.6 , HORVU2Hr1G072500.7 , HORVU2Hr1G072500.8 , HORVU2Hr1G072500.9 , HORVU2Hr1G077120.9 , HORVU2Hr1G077120.8 , HORVU2Hr1G077120.1 , HORVU2Hr1G077120.3 , HORVU2Hr1G077120.2 , HORVU2Hr1G077120.5 , HORVU2Hr1G077120.4 , HORVU2Hr1G077120.7 , HORVU2Hr1G077120.6 , HORVU2Hr1G072500.23 , HORVU2Hr1G072500.22 , HORVU2Hr1G072500.21 , HORVU2Hr1G072500.20 , HORVU2Hr1G072500.27 , HORVU2Hr1G072500.26 , HORVU2Hr1G072500.25 , HORVU2Hr1G072500.24 , HORVU2Hr1G072500.29 , HORVU2Hr1G072500.28 , HORVU2Hr1G072500.30 , HORVU2Hr1G072500.31 , HORVU2Hr1G072500.32 , HORVU2Hr1G072500.33 , HORVU2Hr1G072500.34 , HORVU2Hr1G072500.35 , HORVU2Hr1G072500.36 , HORVU2Hr1G072500.37 , HORVU2Hr1G077120.14 , HORVU2Hr1G077120.11 , HORVU2Hr1G077120.10 , HORVU2Hr1G077120.13 , HORVU2Hr1G077120.12 , HORVU2Hr1G072500.18 , HORVU2Hr1G072500.19 , HORVU2Hr1G072500.12 , HORVU2Hr1G072500.13 , HORVU2Hr1G072500.10 , HORVU2Hr1G072500.11 , HORVU2Hr1G072500.16 , HORVU2Hr1G072500.17 , HORVU2Hr1G072500.14 , HORVU2Hr1G072500.15
Wheat TraesCS2A02G293400 , TraesCS2A02G293400 , TraesCS2B02G327300 , TraesCS2B02G327300 , TraesCS2B02G327300 , TraesCS2D02G290800 , TraesCS2B02G327300 , TraesCS2A02G310300 , TraesCS2A02G310300 , TraesCS2A02G310300 , TraesCS2D02G308600 , TraesCS2D02G308600 , TraesCS2B02G309500 , TraesCS2B02G309500 , TraesCS2B02G309500 , TraesCS2D02G290800 , TraesCS2D02G290800 , TraesCS2D02G290800
Populus PNT31055 , PNT31057 , PNT31056 , PNT31059 , PNT31058


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cDNA sequences
Sobic.006G066800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G322000 transporter family protein, putative, expressed -
2 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
3 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
4 Sobic.004G269800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
5 Sobic.001G015200 S1 RNA binding domain containing protein, expressed -
6 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
7 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
8 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
9 Sobic.002G159100 chlorophyll A-B binding protein, putative, expressed K14172: light-harvesting complex II chlorophyll a/b binding protein 7
10 Sobic.003G313900 jacalin-like lectin domain containing protein, expressed -
11 Sobic.004G028300 expressed protein -
12 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
13 Sobic.003G339700 CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
14 Sobic.009G225600 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
15 Sobic.001G309900 transporter, major facilitator family, putative, expressed -
16 Sobic.007G166300 lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
17 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
18 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.006G235350 - -
20 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1


Gene co-expression network
sample Sobic006G066800 Sobic006G066800 Sobic002G322000 Sobic002G322000 Sobic006G066800--Sobic002G322000 Sobic010G047700 Sobic010G047700 Sobic006G066800--Sobic010G047700 Sobic004G206100 Sobic004G206100 Sobic006G066800--Sobic004G206100 Sobic004G269800 Sobic004G269800 Sobic006G066800--Sobic004G269800 Sobic001G015200 Sobic001G015200 Sobic006G066800--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic006G066800--Sobic008G088821 Sobic006G140500 Sobic006G140500 Sobic006G066800--Sobic006G140500 Sobic004G305900 Sobic004G305900 Sobic006G066800--Sobic004G305900 Sobic002G159100 Sobic002G159100 Sobic006G066800--Sobic002G159100 Sobic002G322000--Sobic006G066800 Sobic004G323400 Sobic004G323400 Sobic002G322000--Sobic004G323400 Sobic004G097300 Sobic004G097300 Sobic002G322000--Sobic004G097300 Sobic003G313900 Sobic003G313900 Sobic002G322000--Sobic003G313900 Sobic001G309900 Sobic001G309900 Sobic002G322000--Sobic001G309900 Sobic001G104900 Sobic001G104900 Sobic002G322000--Sobic001G104900 Sobic004G282900 Sobic004G282900 Sobic002G322000--Sobic004G282900 Sobic003G269300 Sobic003G269300 Sobic002G322000--Sobic003G269300 Sobic002G322000--Sobic004G269800 Sobic010G047700--Sobic006G066800 Sobic010G047700--Sobic004G206100 Sobic006G063900 Sobic006G063900 Sobic010G047700--Sobic006G063900 Sobic010G047700--Sobic001G015200 Sobic004G028300 Sobic004G028300 Sobic010G047700--Sobic004G028300 Sobic003G370000 Sobic003G370000 Sobic010G047700--Sobic003G370000 Sobic001G167900 Sobic001G167900 Sobic010G047700--Sobic001G167900 Sobic010G047700--Sobic008G088821 Sobic004G359600 Sobic004G359600 Sobic010G047700--Sobic004G359600 Sobic004G206100--Sobic001G015200 Sobic001G436400 Sobic001G436400 Sobic004G206100--Sobic001G436400 Sobic007G166300 Sobic007G166300 Sobic004G206100--Sobic007G166300 Sobic004G206100--Sobic008G088821 Sobic007G181400 Sobic007G181400 Sobic004G206100--Sobic007G181400 Sobic005G028800 Sobic005G028800 Sobic004G206100--Sobic005G028800 Sobic004G206100--Sobic004G305900 Sobic009G119300 Sobic009G119300 Sobic004G206100--Sobic009G119300 Sobic004G206100--Sobic006G066800 Sobic004G269800--Sobic005G028800 Sobic004G269800--Sobic007G166300 Sobic001G276300 Sobic001G276300 Sobic004G269800--Sobic001G276300 Sobic004G269800--Sobic006G063900 Sobic001G509200 Sobic001G509200 Sobic004G269800--Sobic001G509200 Sobic009G132000 Sobic009G132000 Sobic004G269800--Sobic009G132000 Sobic006G213700 Sobic006G213700 Sobic004G269800--Sobic006G213700 Sobic009G170200 Sobic009G170200 Sobic004G269800--Sobic009G170200 Sobic004G103300 Sobic004G103300 Sobic004G269800--Sobic004G103300 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic006G140500--Sobic008G088821 Sobic006G235350 Sobic006G235350 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic001G029600 Sobic001G029600 Sobic006G140500--Sobic001G029600 Sobic006G140500--Sobic009G119300 Sobic006G140500--Sobic004G028300 Sobic004G202200 Sobic004G202200 Sobic006G140500--Sobic004G202200 Sobic006G140500--Sobic005G028800 Sobic006G140500--Sobic007G166300 Sobic004G305900--Sobic001G015200 Sobic004G305900--Sobic008G088821 Sobic004G305900--Sobic003G103300 Sobic004G305900--Sobic005G028800 Sobic004G305900--Sobic006G140500 Sobic004G305900--Sobic001G167900 Sobic004G305900--Sobic007G166300 Sobic004G305900--Sobic010G101000 Sobic004G305900--Sobic004G028300 Sobic004G124400 Sobic004G124400 Sobic002G159100--Sobic004G124400 Sobic002G200900 Sobic002G200900 Sobic002G159100--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic002G159100--Sobic001G220000 Sobic002G159100--Sobic006G063900 Sobic006G108200 Sobic006G108200 Sobic002G159100--Sobic006G108200 Sobic001G350000 Sobic001G350000 Sobic002G159100--Sobic001G350000 Sobic002G159100--Sobic001G436400 Sobic006G197300 Sobic006G197300 Sobic002G159100--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic002G159100--Sobic001G005200
Octagon: transcription factors


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