Gene annotation
Transcriptome id Sobic.007G068200.1
Synonym Sb07g005400, ATSS3, SS3
Functional annotation starch synthase III, putative, expressed
UniProt B2Z9Y1 , A0A1B6PG50 , C6JRH9 , A0T305 , A0T380 , A0T373
Pfam PF00534 PF08323 PF16760
Panther DB PTHR12526 PTHR12526:SF345
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11720 : starch synthase 3
RAP-DB (Rice) LOC_Os08g09230.2 : starch synthase III, putative, expressed
MaizeGDB (Corn) Zm00025a057063 , Zm00025a054798 , Zm00025a009713
Brachypodium PNT66626 , KQJ95067 , KQJ84696
Barley HORVU2Hr1G106410.10 , HORVU2Hr1G106410.11 , HORVU2Hr1G106410.12 , HORVU2Hr1G106410.13 , HORVU2Hr1G106410.8 , HORVU1Hr1G021590.12 , HORVU1Hr1G021590.13 , HORVU1Hr1G021590.10 , HORVU1Hr1G021590.11 , HORVU1Hr1G021590.16 , HORVU1Hr1G021590.14 , HORVU1Hr1G021590.15 , HORVU1Hr1G021590.2 , HORVU1Hr1G021590.3 , HORVU1Hr1G021590.4 , HORVU1Hr1G021590.5 , HORVU1Hr1G021590.6 , HORVU1Hr1G021590.7 , HORVU2Hr1G106410.6 , HORVU2Hr1G106410.7 , HORVU2Hr1G106410.4 , HORVU2Hr1G106410.5 , HORVU2Hr1G106410.3 , HORVU2Hr1G106410.1 , HORVU2Hr1G106410.9
Wheat TraesCS1A02G091500 , TraesCS2A02G468800 , TraesCS2A02G468800 , TraesCS2B02G491700 , TraesCS1B02G119300 , TraesCS1B02G119300 , TraesCS1D02G100100 , TraesCS1D02G100100 , TraesCS1D02G100100 , TraesCS2D02G468900 , TraesCS2D02G468900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G062600 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
2 Sobic.002G016800 OsFBD13 - F-box and FBD domain containing protein, expressed -
3 Sobic.001G075200 - -
4 Sobic.007G080200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
6 Sobic.001G392700 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
7 Sobic.004G163700 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
8 Sobic.006G018751 - -
9 Sobic.005G172800 expressed protein -
10 Sobic.007G086701 - -
11 Sobic.002G147400 homeodomain-related, putative, expressed -
12 Sobic.001G264600 - -
13 Sobic.010G207900 prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
14 Sobic.002G099866 - -
15 Sobic.001G261529 - -
16 Sobic.009G056900 acetyltransferase, GNAT family protein, expressed -
17 Sobic.005G083280 - -
18 Sobic.004G200400 protein kinase domain containing protein, expressed -
19 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -
20 Sobic.004G322901 - -


Gene co-expression network
sample Sobic007G068200 Sobic007G068200 Sobic006G062600 Sobic006G062600 Sobic007G068200--Sobic006G062600 Sobic002G016800 Sobic002G016800 Sobic007G068200--Sobic002G016800 Sobic001G075200 Sobic001G075200 Sobic007G068200--Sobic001G075200 Sobic007G080200 Sobic007G080200 Sobic007G068200--Sobic007G080200 Sobic009G056100 Sobic009G056100 Sobic007G068200--Sobic009G056100 Sobic001G392700 Sobic001G392700 Sobic007G068200--Sobic001G392700 Sobic004G163700 Sobic004G163700 Sobic007G068200--Sobic004G163700 Sobic006G018751 Sobic006G018751 Sobic007G068200--Sobic006G018751 Sobic005G172800 Sobic005G172800 Sobic007G068200--Sobic005G172800 Sobic006G062600--Sobic001G392700 Sobic009G056900 Sobic009G056900 Sobic006G062600--Sobic009G056900 Sobic006G062600--Sobic001G075200 Sobic006G062600--Sobic007G068200 Sobic002G147400 Sobic002G147400 Sobic006G062600--Sobic002G147400 Sobic002G066700 Sobic002G066700 Sobic006G062600--Sobic002G066700 Sobic010G207900 Sobic010G207900 Sobic006G062600--Sobic010G207900 Sobic001G075201 Sobic001G075201 Sobic006G062600--Sobic001G075201 Sobic007G086701 Sobic007G086701 Sobic006G062600--Sobic007G086701 Sobic002G016800--Sobic007G068200 Sobic005G052100 Sobic005G052100 Sobic002G016800--Sobic005G052100 Sobic004G090200 Sobic004G090200 Sobic002G016800--Sobic004G090200 Sobic001G112350 Sobic001G112350 Sobic002G016800--Sobic001G112350 Sobic007G069800 Sobic007G069800 Sobic002G016800--Sobic007G069800 Sobic005G003100 Sobic005G003100 Sobic002G016800--Sobic005G003100 Sobic002G069800 Sobic002G069800 Sobic002G016800--Sobic002G069800 Sobic008G143400 Sobic008G143400 Sobic002G016800--Sobic008G143400 Sobic009G051201 Sobic009G051201 Sobic002G016800--Sobic009G051201 Sobic001G075200--Sobic001G392700 Sobic001G075200--Sobic002G147400 Sobic001G075200--Sobic001G075201 Sobic001G075200--Sobic006G062600 Sobic001G075200--Sobic009G056900 Sobic009G119100 Sobic009G119100 Sobic001G075200--Sobic009G119100 Sobic008G154600 Sobic008G154600 Sobic001G075200--Sobic008G154600 Sobic005G201200 Sobic005G201200 Sobic001G075200--Sobic005G201200 Sobic001G075200--Sobic007G068200 Sobic007G080200--Sobic007G068200 Sobic007G080200--Sobic006G062600 Sobic007G080200--Sobic001G075200 Sobic007G080200--Sobic002G147400 Sobic007G080200--Sobic002G016800 Sobic007G080200--Sobic001G392700 Sobic007G080200--Sobic009G119100 Sobic007G080200--Sobic009G056900 Sobic007G080200--Sobic001G075201 Sobic007G126000 Sobic007G126000 Sobic009G056100--Sobic007G126000 Sobic009G056100--Sobic010G207900 Sobic002G358000 Sobic002G358000 Sobic009G056100--Sobic002G358000 Sobic002G286800 Sobic002G286800 Sobic009G056100--Sobic002G286800 Sobic003G099900 Sobic003G099900 Sobic009G056100--Sobic003G099900 Sobic007G131100 Sobic007G131100 Sobic009G056100--Sobic007G131100 Sobic008G082300 Sobic008G082300 Sobic009G056100--Sobic008G082300 Sobic008G188200 Sobic008G188200 Sobic009G056100--Sobic008G188200 Sobic008G064100 Sobic008G064100 Sobic009G056100--Sobic008G064100 Sobic001G392700--Sobic009G056900 Sobic001G392700--Sobic002G147400 Sobic001G392700--Sobic001G075201 Sobic001G392700--Sobic002G066700 Sobic001G392700--Sobic001G075200 Sobic001G392700--Sobic005G201200 Sobic001G392700--Sobic008G154600 Sobic001G392700--Sobic006G062600 Sobic002G266600 Sobic002G266600 Sobic001G392700--Sobic002G266600 Sobic001G194100 Sobic001G194100 Sobic004G163700--Sobic001G194100 Sobic006G015800 Sobic006G015800 Sobic004G163700--Sobic006G015800 Sobic004G262100 Sobic004G262100 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic007G041200 Sobic007G041200 Sobic004G163700--Sobic007G041200 Sobic003G092600 Sobic003G092600 Sobic004G163700--Sobic003G092600 Sobic010G273800 Sobic010G273800 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900 Sobic006G018751--Sobic007G086701 Sobic006G018751--Sobic010G207900 Sobic001G264600 Sobic001G264600 Sobic006G018751--Sobic001G264600 Sobic001G261529 Sobic001G261529 Sobic006G018751--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic006G018751--Sobic005G083280 Sobic006G018751--Sobic007G126000 Sobic004G322901 Sobic004G322901 Sobic006G018751--Sobic004G322901 Sobic006G018751--Sobic002G266600 Sobic006G018751--Sobic002G066700 Sobic005G172800--Sobic009G056100 Sobic005G172800--Sobic006G062600 Sobic005G172800--Sobic007G068200 Sobic005G172800--Sobic004G322901 Sobic009G229900 Sobic009G229900 Sobic005G172800--Sobic009G229900 Sobic005G172800--Sobic010G207900 Sobic007G056900 Sobic007G056900 Sobic005G172800--Sobic007G056900 Sobic002G230400 Sobic002G230400 Sobic005G172800--Sobic002G230400 Sobic005G172800--Sobic007G126000
Octagon: transcription factors


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