Gene annotation
Transcriptome id Sobic.009G209300.1,Sobic.009G209300.2
Synonym SS4, ATSS4, Sb09g026570, SSIV
Functional annotation starch synthase, putative, expressed
UniProt C5YUG2
Pfam PF00534 PF08323
Panther DB PTHR12526 PTHR12526:SF304
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18240 : starch synthase 4
RAP-DB (Rice) LOC_Os05g45720.1 : starch synthase, putative, expressed
MaizeGDB (Corn) Zm00025a038019
Brachypodium KQK05227 , PNT70834
Barley HORVU1Hr1G080950.11 , HORVU1Hr1G080950.10 , HORVU1Hr1G080950.13 , HORVU1Hr1G080950.12 , HORVU1Hr1G080950.15 , HORVU1Hr1G080950.14 , HORVU1Hr1G080950.17 , HORVU1Hr1G080950.16 , HORVU1Hr1G080950.19 , HORVU1Hr1G080950.18 , HORVU1Hr1G080950.5 , HORVU1Hr1G080950.4 , HORVU1Hr1G080950.7 , HORVU1Hr1G080950.6 , HORVU1Hr1G080950.1 , HORVU1Hr1G080950.3 , HORVU1Hr1G080950.2 , HORVU1Hr1G080950.9 , HORVU1Hr1G080950.8 , HORVU1Hr1G080950.20 , HORVU1Hr1G080950.21 , HORVU1Hr1G080950.22 , HORVU1Hr1G080950.23
Wheat TraesCS1B02G368500 , TraesCS1B02G368500 , TraesCS1A02G353300 , TraesCS1D02G356900 , TraesCS1D02G356900 , TraesCS1D02G356900 , TraesCS1D02G356900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332800 GTPase-activating protein, putative, expressed -
2 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
3 Sobic.003G429650 - -
4 Sobic.006G182900 expressed protein -
5 Sobic.006G048500 - -
6 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
7 Sobic.002G006600 aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
8 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
9 Sobic.001G036050 - -
10 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.005G159000 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed -
12 Sobic.006G032500 - -
13 Sobic.002G145101 - -
14 Sobic.001G261573 - -
15 Sobic.001G456900 expressed protein -
16 Sobic.001G214300 expressed protein -
17 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
19 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
20 Sobic.006G079400 - -


Gene co-expression network
sample Sobic009G209300 Sobic009G209300 Sobic003G332800 Sobic003G332800 Sobic009G209300--Sobic003G332800 Sobic006G216800 Sobic006G216800 Sobic009G209300--Sobic006G216800 Sobic003G429650 Sobic003G429650 Sobic009G209300--Sobic003G429650 Sobic006G182900 Sobic006G182900 Sobic009G209300--Sobic006G182900 Sobic006G048500 Sobic006G048500 Sobic009G209300--Sobic006G048500 Sobic007G116200 Sobic007G116200 Sobic009G209300--Sobic007G116200 Sobic002G006600 Sobic002G006600 Sobic009G209300--Sobic002G006600 Sobic003G148000 Sobic003G148000 Sobic009G209300--Sobic003G148000 Sobic001G036050 Sobic001G036050 Sobic009G209300--Sobic001G036050 Sobic007G096600 Sobic007G096600 Sobic003G332800--Sobic007G096600 Sobic003G332800--Sobic006G216800 Sobic003G332800--Sobic003G148000 Sobic002G006900 Sobic002G006900 Sobic003G332800--Sobic002G006900 Sobic007G167500 Sobic007G167500 Sobic003G332800--Sobic007G167500 Sobic003G332800--Sobic009G209300 Sobic002G243900 Sobic002G243900 Sobic003G332800--Sobic002G243900 Sobic007G065400 Sobic007G065400 Sobic003G332800--Sobic007G065400 Sobic003G176500 Sobic003G176500 Sobic003G332800--Sobic003G176500 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic006G216800--Sobic007G116200 Sobic002G309600 Sobic002G309600 Sobic006G216800--Sobic002G309600 Sobic002G134200 Sobic002G134200 Sobic006G216800--Sobic002G134200 Sobic006G216800--Sobic003G332800 Sobic005G112300 Sobic005G112300 Sobic006G216800--Sobic005G112300 Sobic003G280800 Sobic003G280800 Sobic006G216800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic003G429650--Sobic006G048500 Sobic003G429650--Sobic006G182900 Sobic003G429650--Sobic003G148000 Sobic005G144400 Sobic005G144400 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic003G429650--Sobic002G006900 Sobic006G182900--Sobic003G429650 Sobic006G182900--Sobic006G048500 Sobic007G161000 Sobic007G161000 Sobic006G182900--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G182900--Sobic001G365900 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic006G182900--Sobic002G134200 Sobic006G182900--Sobic001G214300 Sobic006G182900--Sobic009G209300 Sobic004G007100 Sobic004G007100 Sobic006G048500--Sobic004G007100 Sobic006G048500--Sobic005G144400 Sobic002G145101 Sobic002G145101 Sobic006G048500--Sobic002G145101 Sobic006G048500--Sobic003G148000 Sobic006G048500--Sobic003G429650 Sobic006G048500--Sobic002G243900 Sobic006G048600 Sobic006G048600 Sobic006G048500--Sobic006G048600 Sobic006G048500--Sobic002G006900 Sobic006G048500--Sobic006G182900 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic007G116200--Sobic002G134200 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic007G116200--Sobic010G139000 Sobic010G256700 Sobic010G256700 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic007G116200--Sobic003G280800 Sobic003G017100 Sobic003G017100 Sobic002G006600--Sobic003G017100 Sobic001G198100 Sobic001G198100 Sobic002G006600--Sobic001G198100 Sobic010G002700 Sobic010G002700 Sobic002G006600--Sobic010G002700 Sobic001G169900 Sobic001G169900 Sobic002G006600--Sobic001G169900 Sobic002G006600--Sobic003G429650 Sobic004G164400 Sobic004G164400 Sobic002G006600--Sobic004G164400 Sobic002G006600--Sobic006G182900 Sobic002G006600--Sobic009G209300 Sobic006G105400 Sobic006G105400 Sobic002G006600--Sobic006G105400 Sobic003G148000--Sobic005G144400 Sobic002G180666 Sobic002G180666 Sobic003G148000--Sobic002G180666 Sobic003G148000--Sobic002G145101 Sobic003G148000--Sobic006G048500 Sobic003G148000--Sobic002G243900 Sobic003G148000--Sobic001G214300 Sobic003G148000--Sobic007G096600 Sobic003G148000--Sobic003G429650 Sobic004G258700 Sobic004G258700 Sobic003G148000--Sobic004G258700 Sobic001G036050--Sobic010G139000 Sobic001G456900 Sobic001G456900 Sobic001G036050--Sobic001G456900 Sobic001G036050--Sobic004G096600 Sobic001G036050--Sobic002G133400 Sobic001G036050--Sobic006G216800 Sobic004G314000 Sobic004G314000 Sobic001G036050--Sobic004G314000 Sobic001G036050--Sobic004G258700 Sobic010G123600 Sobic010G123600 Sobic001G036050--Sobic010G123600 Sobic003G170900 Sobic003G170900 Sobic001G036050--Sobic003G170900
Octagon: transcription factors


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