Gene annotation
Transcriptome id Sobic.010G273800.2,Sobic.010G273800.3,Sobic.010G273800.4,Sobic.010G273800.5
Synonym SBE2.2, SBEI, Sb10g030776
Functional annotation starch biosynthesis, 1,4-alpha-glucan branching enzyme (PubMedID : 21853065)
1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
UniProt A5Y382 , Q9M6P8 , A5Y339 , G3FN20 , G3FN03 , A5Y338
Pfam PF00128 PF02922 PF02806
Panther DB PTHR10357 PTHR10357:SF110
NCBI CDD -
KEGG Orthology K00700; GBE1, 1,4-alpha-glucan branching enzyme
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G03650 : starch branching enzyme 2.2
RAP-DB (Rice) LOC_Os06g51084.1 : 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005563 , Zm00025a005562 , Zm00025a018538
Brachypodium KQK16670
Barley HORVU0Hr1G022810.15 , HORVU0Hr1G022810.14 , HORVU0Hr1G022810.17 , HORVU0Hr1G022810.16 , HORVU0Hr1G022810.11 , HORVU0Hr1G022810.10 , HORVU0Hr1G022810.13 , HORVU0Hr1G022810.12 , HORVU0Hr1G022810.18 , HORVU0Hr1G022790.2 , HORVU0Hr1G022790.1 , HORVU0Hr1G022790.6 , HORVU0Hr1G022790.5 , HORVU0Hr1G022810.1 , HORVU0Hr1G022810.3 , HORVU0Hr1G022810.2 , HORVU0Hr1G022810.5 , HORVU0Hr1G022810.4 , HORVU0Hr1G022810.7 , HORVU0Hr1G022810.6 , HORVU0Hr1G022810.9 , HORVU0Hr1G022810.8
Wheat TraesCS7B02G472500 , TraesCS7B02G472500 , TraesCS7B02G472400 , TraesCS7B02G472300 , TraesCS7B02G472300 , TraesCS7A02G549100 , TraesCS7A02G549100 , TraesCS7A02G549100 , TraesCS7A02G549100 , TraesCS7A02G549100 , TraesCS7A02G549200 , TraesCS7A02G549300 , TraesCS7A02G549300 , TraesCS7D02G535400 , TraesCS7D02G535400 , TraesCS7D02G535400
Populus -


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cDNA sequences
Sobic.010G273800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G015800 1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
2 Sobic.003G092600 seven in absentia protein family protein, expressed -
3 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
4 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
5 Sobic.010G093400 Starch Synthase IIa(PubMedID : 21853065)@soluble starch synthase 2-3, chloroplast precursor, putative, expressed K00703: starch synthase
6 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -
7 Sobic.009G207500 OsFBX238 - F-box domain containing protein, expressed -
8 Sobic.001G425900 EDM2, putative, expressed -
9 Sobic.004G294100 ZOS2-14 - C2H2 zinc finger protein, expressed -
10 Sobic.004G139700 OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
11 Sobic.004G212350 - -
12 Sobic.010G207400 protein kinase domain containing protein, expressed -
13 Sobic.003G230500 glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
14 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
15 Sobic.001G083900 alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
16 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
17 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
18 Sobic.007G204600 Alpha amylase, catalytic domain containing protein, expressed K01214: ISA, isoamylase
19 Sobic.010G060100 leucoanthocyanidin dioxygenase, putative, expressed -
20 Sobic.004G163700 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme


Gene co-expression network
sample Sobic010G273800 Sobic010G273800 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic004G322901 Sobic004G322901 Sobic006G015800--Sobic004G322901 Sobic001G371600 Sobic001G371600 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic003G092600--Sobic002G015800 Sobic005G083280 Sobic005G083280 Sobic003G092600--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic001G509100 Sobic001G509100 Sobic003G092600--Sobic001G509100 Sobic004G262100--Sobic002G015800 Sobic004G262100--Sobic003G092600 Sobic004G262100--Sobic001G324800 Sobic004G262100--Sobic001G509100 Sobic002G360900 Sobic002G360900 Sobic004G262100--Sobic002G360900 Sobic004G262100--Sobic001G261529 Sobic004G262100--Sobic005G083280 Sobic003G101200 Sobic003G101200 Sobic004G262100--Sobic003G101200 Sobic010G022600 Sobic010G022600 Sobic004G262100--Sobic010G022600 Sobic001G324800--Sobic003G092600 Sobic001G394900 Sobic001G394900 Sobic001G324800--Sobic001G394900 Sobic001G324800--Sobic002G015800 Sobic001G324800--Sobic002G360900 Sobic001G324800--Sobic004G262100 Sobic001G324800--Sobic006G015800 Sobic001G324800--Sobic010G022600 Sobic001G324800--Sobic001G509100 Sobic010G107300 Sobic010G107300 Sobic001G324800--Sobic010G107300 Sobic007G152500 Sobic007G152500 Sobic010G093400--Sobic007G152500 Sobic007G204600 Sobic007G204600 Sobic010G093400--Sobic007G204600 Sobic010G093400--Sobic010G273800 Sobic003G358200 Sobic003G358200 Sobic010G093400--Sobic003G358200 Sobic003G230500 Sobic003G230500 Sobic010G093400--Sobic003G230500 Sobic002G420800 Sobic002G420800 Sobic010G093400--Sobic002G420800 Sobic010G093400--Sobic002G100000 Sobic010G093400--Sobic004G212350 Sobic005G171800 Sobic005G171800 Sobic010G093400--Sobic005G171800 Sobic002G015800--Sobic003G092600 Sobic002G015800--Sobic001G261529 Sobic002G015800--Sobic005G083280 Sobic002G015800--Sobic004G262100 Sobic002G015800--Sobic001G509100 Sobic002G015800--Sobic001G324800 Sobic002G015800--Sobic010G022600 Sobic002G015800--Sobic010G107300 Sobic002G015800--Sobic004G322901 Sobic005G090500 Sobic005G090500 Sobic009G207500--Sobic005G090500 Sobic006G271400 Sobic006G271400 Sobic009G207500--Sobic006G271400 Sobic002G053100 Sobic002G053100 Sobic009G207500--Sobic002G053100 Sobic010G209300 Sobic010G209300 Sobic009G207500--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic009G207500--Sobic006G031000 Sobic009G021300 Sobic009G021300 Sobic009G207500--Sobic009G021300 Sobic005G075000 Sobic005G075000 Sobic009G207500--Sobic005G075000 Sobic001G142600 Sobic001G142600 Sobic009G207500--Sobic001G142600 Sobic002G408700 Sobic002G408700 Sobic009G207500--Sobic002G408700 Sobic010G118200 Sobic010G118200 Sobic001G425900--Sobic010G118200 Sobic001G425900--Sobic006G271400 Sobic009G033500 Sobic009G033500 Sobic001G425900--Sobic009G033500 Sobic010G058000 Sobic010G058000 Sobic001G425900--Sobic010G058000 Sobic002G101200 Sobic002G101200 Sobic001G425900--Sobic002G101200 Sobic002G166800 Sobic002G166800 Sobic001G425900--Sobic002G166800 Sobic001G425900--Sobic010G209300 Sobic001G425900--Sobic006G031000 Sobic007G091200 Sobic007G091200 Sobic001G425900--Sobic007G091200 Sobic004G099750 Sobic004G099750 Sobic004G294100--Sobic004G099750 Sobic001G175501 Sobic001G175501 Sobic004G294100--Sobic001G175501 Sobic006G178400 Sobic006G178400 Sobic004G294100--Sobic006G178400 Sobic003G135000 Sobic003G135000 Sobic004G294100--Sobic003G135000 Sobic001G158600 Sobic001G158600 Sobic004G294100--Sobic001G158600 Sobic001G253400 Sobic001G253400 Sobic004G294100--Sobic001G253400 Sobic005G193700 Sobic005G193700 Sobic004G294100--Sobic005G193700 Sobic004G139700 Sobic004G139700 Sobic004G294100--Sobic004G139700 Sobic006G104800 Sobic006G104800 Sobic004G294100--Sobic006G104800
Octagon: transcription factors


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