Sb03g007760


Gene annotaion
Orghologs
FL-cDNA clone
RNA-seq
Find similar expressed genes
Gene co-expression network

Gene annotation
Gene models Sb03g007760.1
Synonym
Functional annotation ABC transporter family protein
UniProt C5XE71
InterPro IPR017871: ABC transporter, conserved site
IPR013525: ABC-2 type transporter
IPR003593: ATPase, AAA+ type, core
IPR003439: ABC transporter-like
Pfam PF02485
Panther DB PTHR19241
NCBI CDD KOG0061: Transporter, ABC superfamily (Breast cancer resistance protein)
KEGG Orthology
EC number
Ontology GO:0000166: Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]
GO:0003674: Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions. [GOC:go_curators]
GO:0005524: Interacting selectively and non-covalently with ATP, adenosine 5\'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]
GO:0005575: The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. [GOC:go_curators]
GO:0005622: The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]
GO:0005623: The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators]
GO:0005737: All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]
GO:0006200: The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5\'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:ai]
GO:0008150: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. [GOC:go_curators, GOC:isa_complete]
GO:0009056: The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684]
GO:0009507: A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]
GO:0009536: Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684]
GO:0009941: The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]
GO:0016020: Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. [GOC:mah, ISBN:0815316194]
GO:0016887: Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl]
GO:0017111: Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate. [EC:3.6.1.15]
GO:0022857: Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729]
GO:0034641: The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. [GOC:mah]
GO:0034655: The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:mah]
GO:0042626: Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl]
GO:0043167: Interacting selectively and non-covalently with ions, charged atoms or groups of atoms. [GOC:jl]
GO:0043226: Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. [GOC:go_curators]
GO:0044281: The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:pde, GOC:vw]


Orthologs
TAIR AT2G01320: ABC-2 type transporter family protein
RAP-DB (Rice) OS01G0121700: ABC transporter-like domain containing protein. (Os01t0121700-01)
MaizeGDB (Corn) GRMZM2G119345
Brachypodium BRADI2G01610
Barley Traes_3DS_6774BF63A Traes_3AS_BB185F2EB Traes_3B_77C6EE076
Wheat Potri.010G115000
Populus MLOC_72088


Full-length cDNA clone information
fl-cDNA clone ID and sequence
Gene structure


Expression pattern by RNA-Seq analysis
FPKM plot
Expression pattern on the genome browser


Find similar expressed genes
Top 20 genes with similar expressed profiles
Link to sample list (same order with the figure)

Rank Gene Score (JSD) Function KEGG pathway
1 Sb03g007760 0.00000 ABC transporter family protein -
2 Sb02g008130 0.09933 ATPLDDELTA; phospholipase D Glycerophospholipid metabolism Ether lipid metabolism Metabolic pathways Endocytosis
3 Sb07g002415 0.10219 F-box family protein -
4 Sb02g042100 0.10478 DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding Starch and sucrose metabolism Metabolic pathways
5 Sb08g002770 0.10578 protein phosphatase-related -
6 Sb07g023110 0.10960 hydrolase -
7 Sb01g003010 0.11143 sugar transporter family protein -
8 Sb10g031125 0.11151 ATIPT9; ATP binding / tRNA isopentenyltransferase Zeatin biosynthesis Metabolic pathways Biosynthesis of secondary metabolites
9 Sb03g032360 0.11312 CLC-E (CHLORIDE CHANNEL E); ion channel/ voltage-gated chloride channel -
10 Sb09g027250 0.11519 zinc ion binding -
11 Sb03g034230 0.11652 HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase Glycolysis / Gluconeogenesis Fructose and mannose metabolism Galactose metabolism Starch and sucrose metabolism Amino sugar and nucleotide sugar metabolism Metabolic pathways Biosynthesis of secondary metabolites Carbon metabolism
12 Sb01g046590 0.12269 F-box family protein -
13 Sb02g032950 0.12300 DNAJ heat shock N-terminal domain-containing protein -
14 Sb05g008140 0.12313 RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); nucleotide binding / protein binding Plant-pathogen interaction
15 Sb01g011810 0.12331 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10); magnesium ion transmembrane transporter -
16 Sb02g032310 0.12431 mitochondrial substrate carrier family protein -
17 Sb04g035970 0.12494 pentatricopeptide (PPR) repeat-containing protein -
18 Sb07g025240 0.12554 MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase Synthesis and degradation of ketone bodies Valine, leucine and isoleucine degradation Butanoate metabolism Terpenoid backbone biosynthesis Metabolic pathways Biosynthesis of secondary metabolites
19 Sb09g022000 0.12591 unknown protein -
20 Sb01g005930 0.12812 ubiquitin thiolesterase -


Gene co-expression network
Gene co-expression network
sample Sb03g007760 Sb03g007760 Sb02g008130 Sb02g008130 Sb03g007760--Sb02g008130 Sb07g002415 Sb07g002415 Sb03g007760--Sb07g002415 Sb02g042100 Sb02g042100 Sb03g007760--Sb02g042100 Sb08g002770 Sb08g002770 Sb03g007760--Sb08g002770 Sb07g023110 Sb07g023110 Sb03g007760--Sb07g023110 Sb01g003010 Sb01g003010 Sb03g007760--Sb01g003010 Sb02g008130--Sb02g042100 Sb02g008130--Sb08g002770 Sb03g032360 Sb03g032360 Sb02g008130--Sb03g032360 Sb01g049200 Sb01g049200 Sb02g008130--Sb01g049200 Sb04g005790 Sb04g005790 Sb02g008130--Sb04g005790 Sb07g002415--Sb01g003010 Sb06g001220 Sb06g001220 Sb07g002415--Sb06g001220 Sb06g029410 Sb06g029410 Sb07g002415--Sb06g029410 Sb04g017850 Sb04g017850 Sb07g002415--Sb04g017850 Sb08g014890 Sb08g014890 Sb07g002415--Sb08g014890 Sb07g001990 Sb07g001990 Sb07g002415--Sb07g001990 Sb02g042100--Sb08g002770 Sb02g042100--Sb01g003010 Sb01g038800 Sb01g038800 Sb02g042100--Sb01g038800 Sb07g017810 Sb07g017810 Sb02g042100--Sb07g017810 Sb06g017270 Sb06g017270 Sb02g042100--Sb06g017270 Sb01g017810 Sb01g017810 Sb02g042100--Sb01g017810 Sb08g002770--Sb01g038800 Sb01g033120 Sb01g033120 Sb08g002770--Sb01g033120 Sb07g020570 Sb07g020570 Sb08g002770--Sb07g020570 Sb07g023110--Sb01g003010 Sb07g023110--Sb07g001990 Sb06g000640 Sb06g000640 Sb07g023110--Sb06g000640 Sb09g002460 Sb09g002460 Sb07g023110--Sb09g002460 Sb04g035970 Sb04g035970 Sb07g023110--Sb04g035970 Sb10g020110 Sb10g020110 Sb07g023110--Sb10g020110 Sb01g003010--Sb06g001220 Sb08g001060 Sb08g001060 Sb01g003010--Sb08g001060 Sb01g033230 Sb01g033230 Sb01g003010--Sb01g033230 Sb02g022990 Sb02g022990 Sb01g003010--Sb02g022990 Sb02g029160 Sb02g029160 Sb01g003010--Sb02g029160
Octagon: transcription factors