Sb04g005790


Gene annotaion
Orghologs
FL-cDNA clone
RNA-seq
Find similar expressed genes
Gene co-expression network

Gene annotation
Gene models Sb04g005790.1
Synonym
Functional annotation centromeric protein-related
UniProt C5XWY8
InterPro
Pfam
Panther DB
NCBI CDD KOG0978: E3 ubiquitin ligase involved in syntaxin degradation
KEGG Orthology
EC number
Ontology GO:0000302: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc]
GO:0006950: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
GO:0008150: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. [GOC:go_curators, GOC:isa_complete]
GO:0010039: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm]
GO:0042592: Any biological process involved in the maintenance of an internal steady state. [GOC:jl, ISBN:0395825172]
GO:0055072: Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]


Orthologs
TAIR AT4G32190: Myosin heavy chain-related protein
RAP-DB (Rice) OS02G0186400: Spectrin repeat containing protein. (Os02t0186400-01)
MaizeGDB (Corn) GRMZM2G104357
Brachypodium BRADI3G06260
Barley Traes_6DS_06B4C6D8B Traes_6AS_47F4AF32D
Wheat Potri.006G255800
Populus MLOC_61850


Full-length cDNA clone information
fl-cDNA clone ID and sequence
Gene structure


Expression pattern by RNA-Seq analysis
FPKM plot
Expression pattern on the genome browser


Find similar expressed genes
Top 20 genes with similar expressed profiles
Link to sample list (same order with the figure)

Rank Gene Score (JSD) Function KEGG pathway
1 Sb04g005790 0.00000 centromeric protein-related -
2 Sb03g032360 0.08516 CLC-E (CHLORIDE CHANNEL E); ion channel/ voltage-gated chloride channel -
3 Sb01g017480 0.09063 DNA mismatch repair MutS family protein -
4 Sb04g017850 0.09479 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein -
5 Sb06g029200 0.09921 -
6 Sb06g019430 0.10250 indole-3-glycerol phosphate synthase, putative Phenylalanine, tyrosine and tryptophan biosynthesis Metabolic pathways Biosynthesis of secondary metabolites Biosynthesis of amino acids
7 Sb02g036520 0.10280 unknown protein -
8 Sb02g008130 0.10419 ATPLDDELTA; phospholipase D Glycerophospholipid metabolism Ether lipid metabolism Metabolic pathways Endocytosis
9 Sb03g003800 0.10439 emb2410 (embryo defective 2410) -
10 Sb01g011840 0.10474 ZML1 (ZIM-LIKE 1); transcription factor -
11 Sb07g002770 0.10678 TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase Glycine, serine and threonine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Metabolic pathways Biosynthesis of secondary metabolites Biosynthesis of amino acids
12 Sb01g049200 0.10756 -
13 Sb01g033120 0.10795 phosphatidylinositol-4-phosphate 5-kinase family protein Inositol phosphate metabolism Phosphatidylinositol signaling system Phagosome
14 Sb02g000720 0.10832 RSR4 (REDUCED SUGAR RESPONSE 4); protein heterodimerization/ protein homodimerization Vitamin B6 metabolism
15 Sb06g028680 0.10949 unknown protein -
16 Sb01g003010 0.11016 sugar transporter family protein -
17 Sb10g001990 0.11061 ACS12; 1-aminocyclopropane-1-carboxylate synthase/ L-aspartate:2-oxoglutarate aminotransferase/ aromatic-amino-acid:2-oxoglutarate aminotransferase -
18 Sb09g018130 0.11109 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1); ubiquitin-protein ligase -
19 Sb03g043810 0.11178 -
20 Sb01g032210 0.11251 CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding -


Gene co-expression network
Gene co-expression network
sample Sb04g005790 Sb04g005790 Sb03g032360 Sb03g032360 Sb04g005790--Sb03g032360 Sb01g017480 Sb01g017480 Sb04g005790--Sb01g017480 Sb04g017850 Sb04g017850 Sb04g005790--Sb04g017850 Sb06g029200 Sb06g029200 Sb04g005790--Sb06g029200 Sb06g019430 Sb06g019430 Sb04g005790--Sb06g019430 Sb02g036520 Sb02g036520 Sb04g005790--Sb02g036520 Sb03g032360--Sb01g017480 Sb09g010840 Sb09g010840 Sb03g032360--Sb09g010840 Sb01g033230 Sb01g033230 Sb03g032360--Sb01g033230 Sb02g004050 Sb02g004050 Sb03g032360--Sb02g004050 Sb02g037020 Sb02g037020 Sb03g032360--Sb02g037020 Sb01g017480--Sb06g019430 Sb01g049200 Sb01g049200 Sb01g017480--Sb01g049200 Sb07g027350 Sb07g027350 Sb01g017480--Sb07g027350 Sb10g008560 Sb10g008560 Sb01g017480--Sb10g008560 Sb06g024240 Sb06g024240 Sb01g017480--Sb06g024240 Sb06g029410 Sb06g029410 Sb04g017850--Sb06g029410 Sb03g043810 Sb03g043810 Sb04g017850--Sb03g043810 Sb03g041670 Sb03g041670 Sb04g017850--Sb03g041670 Sb08g014890 Sb08g014890 Sb04g017850--Sb08g014890 Sb07g002760 Sb07g002760 Sb04g017850--Sb07g002760 Sb09g017250 Sb09g017250 Sb04g017850--Sb09g017250 Sb06g029200--Sb02g036520 Sb01g011840 Sb01g011840 Sb06g029200--Sb01g011840 Sb04g022040 Sb04g022040 Sb06g029200--Sb04g022040 Sb01g008945 Sb01g008945 Sb06g029200--Sb01g008945 Sb04g001520 Sb04g001520 Sb06g029200--Sb04g001520 Sb08g021310 Sb08g021310 Sb06g029200--Sb08g021310 Sb09g007910 Sb09g007910 Sb06g019430--Sb09g007910 Sb03g029040 Sb03g029040 Sb06g019430--Sb03g029040 Sb01g005310 Sb01g005310 Sb06g019430--Sb01g005310 Sb01g047950 Sb01g047950 Sb06g019430--Sb01g047950 Sb02g006790 Sb02g006790 Sb06g019430--Sb02g006790 Sb02g036520--Sb01g017480 Sb05g025510 Sb05g025510 Sb02g036520--Sb05g025510 Sb04g002510 Sb04g002510 Sb02g036520--Sb04g002510 Sb04g026430 Sb04g026430 Sb02g036520--Sb04g026430 Sb02g026990 Sb02g026990 Sb02g036520--Sb02g026990
Octagon: transcription factors