Sb07g002415


Gene annotaion
Orghologs
FL-cDNA clone
RNA-seq
Find similar expressed genes
Gene co-expression network

Gene annotation
Gene models Sb07g002415.1
Synonym
Functional annotation F-box family protein
UniProt C5YMW1
InterPro IPR001810: F-box domain, cyclin-like
Pfam PF00646: F-box domain
Panther DB
NCBI CDD
KEGG Orthology
EC number
Ontology GO:0003674: Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions. [GOC:go_curators]
GO:0005515: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators]


Orthologs
TAIR AT3G58900: F-box/RNI-like superfamily protein
RAP-DB (Rice) OS06G0713400: Cyclin-like F-box domain containing protein. (Os06t0713400-01)
MaizeGDB (Corn) GRMZM2G034748 GRMZM2G702889 AC190750.2_FG014
Brachypodium BRADI4G45120 BRADI4G45090
Barley Traes_7BL_B82FBB380 Traes_7DL_A2A1A4386 Traes_7AL_66EE5D052 Traes_7AL_9846B6074 Traes_7DL_4632F86F4 Traes_1BL_00B75394B Traes_7BL_3724179B6
Wheat Potri.016G108200
Populus MLOC_70506


Full-length cDNA clone information
fl-cDNA clone ID and sequence
Gene structure


Expression pattern by RNA-Seq analysis
FPKM plot
Expression pattern on the genome browser


Find similar expressed genes
Top 20 genes with similar expressed profiles
Link to sample list (same order with the figure)

Rank Gene Score (JSD) Function KEGG pathway
1 Sb07g002415 0.00000 F-box family protein -
2 Sb01g003010 0.07568 sugar transporter family protein -
3 Sb06g001220 0.09132 WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3\'-5\' exonuclease/ nucleic acid binding / protein binding -
4 Sb06g029410 0.09319 F-box family protein -
5 Sb04g017850 0.09327 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein -
6 Sb08g014890 0.09346 cyclin family protein -
7 Sb07g001990 0.10215 adenylate kinase family protein -
8 Sb05g022446 0.10219 F-box family protein -
9 Sb03g007760 0.10219 ABC transporter family protein -
10 Sb08g001060 0.10256 endo/excinuclease amino terminal domain-containing protein -
11 Sb03g041670 0.10295 nitroreductase family protein -
12 Sb04g033640 0.10363 SHOC1 (SHORTAGE IN CHIASMATA 1) -
13 Sb02g029160 0.10388 unknown protein -
14 Sb02g004050 0.10396 EMB175 (EMBRYO DEFECTIVE 175); catalytic -
15 Sb10g030870 0.10451 GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Starch and sucrose metabolism Amino sugar and nucleotide sugar metabolism Biosynthesis of secondary metabolites
16 Sb09g022000 0.10477 unknown protein -
17 Sb03g032330 0.10529 -
18 Sb01g046280 0.10536 pentatricopeptide (PPR) repeat-containing protein -
19 Sb01g033230 0.10732 unknown protein -
20 Sb01g003180 0.10733 mitochondrial transcription termination factor family protein / mTERF family protein -


Gene co-expression network
Gene co-expression network
sample Sb07g002415 Sb07g002415 Sb01g003010 Sb01g003010 Sb07g002415--Sb01g003010 Sb06g001220 Sb06g001220 Sb07g002415--Sb06g001220 Sb06g029410 Sb06g029410 Sb07g002415--Sb06g029410 Sb04g017850 Sb04g017850 Sb07g002415--Sb04g017850 Sb08g014890 Sb08g014890 Sb07g002415--Sb08g014890 Sb07g001990 Sb07g001990 Sb07g002415--Sb07g001990 Sb01g003010--Sb06g001220 Sb08g001060 Sb08g001060 Sb01g003010--Sb08g001060 Sb01g033230 Sb01g033230 Sb01g003010--Sb01g033230 Sb02g022990 Sb02g022990 Sb01g003010--Sb02g022990 Sb02g029160 Sb02g029160 Sb01g003010--Sb02g029160 Sb06g001220--Sb07g001990 Sb06g001220--Sb02g029160 Sb01g003180 Sb01g003180 Sb06g001220--Sb01g003180 Sb10g030870 Sb10g030870 Sb06g001220--Sb10g030870 Sb06g019420 Sb06g019420 Sb06g001220--Sb06g019420 Sb01g016430 Sb01g016430 Sb06g001220--Sb01g016430 Sb06g029410--Sb06g001220 Sb06g029410--Sb04g017850 Sb07g002760 Sb07g002760 Sb06g029410--Sb07g002760 Sb05g022446 Sb05g022446 Sb06g029410--Sb05g022446 Sb04g000800 Sb04g000800 Sb06g029410--Sb04g000800 Sb04g035010 Sb04g035010 Sb06g029410--Sb04g035010 Sb04g017850--Sb08g014890 Sb04g017850--Sb07g002760 Sb03g043810 Sb03g043810 Sb04g017850--Sb03g043810 Sb03g041670 Sb03g041670 Sb04g017850--Sb03g041670 Sb09g017250 Sb09g017250 Sb04g017850--Sb09g017250 Sb08g014890--Sb03g041670 Sb07g011860 Sb07g011860 Sb08g014890--Sb07g011860 Sb03g010160 Sb03g010160 Sb08g014890--Sb03g010160 Sb10g012240 Sb10g012240 Sb08g014890--Sb10g012240 Sb01g004830 Sb01g004830 Sb08g014890--Sb01g004830 Sb02g032380 Sb02g032380 Sb08g014890--Sb02g032380 Sb07g001990--Sb02g029160 Sb07g001990--Sb10g030870 Sb07g001990--Sb06g019420 Sb01g030230 Sb01g030230 Sb07g001990--Sb01g030230 Sb09g019520 Sb09g019520 Sb07g001990--Sb09g019520
Octagon: transcription factors