Sb08g020890


Gene annotaion
Orghologs
FL-cDNA clone
RNA-seq
Find similar expressed genes
Gene co-expression network

Gene annotation
Gene models Sb08g020890.1
Synonym
Functional annotation short-chain dehydrogenase/reductase (SDR) family protein
UniProt C5YRI6
InterPro IPR016040: NAD(P)-binding domain
IPR002347: Glucose/ribitol dehydrogenase
IPR002198: Short-chain dehydrogenase/reductase SDR
Pfam
Panther DB PTHR19410
NCBI CDD KOG1611: Predicted short chain-type dehydrogenase
KEGG Orthology
EC number
Ontology GO:0000166: Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]
GO:0003674: Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions. [GOC:go_curators]
GO:0005975: The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]
GO:0008150: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. [GOC:go_curators, GOC:isa_complete]
GO:0008152: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]
GO:0009058: The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684]
GO:0016491: Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]
GO:0019252: The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
GO:0055114: A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]


Orthologs
TAIR AT4G20760: NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) OS12G0609500: Glucose/ribitol dehydrogenase family protein. (Os12t0609500-01)
MaizeGDB (Corn) GRMZM2G071987
Brachypodium BRADI4G02160
Barley Traes_5BS_03BBAB2C2 Traes_5BS_9B199BDA9 Traes_5AS_1CDAE592C Traes_5DS_14D1D3680
Wheat Potri.011G157300
Populus MLOC_65864


Full-length cDNA clone information
fl-cDNA clone ID and sequence
Gene structure


Expression pattern by RNA-Seq analysis
FPKM plot
Expression pattern on the genome browser


Find similar expressed genes
Top 20 genes with similar expressed profiles
Link to sample list (same order with the figure)

Rank Gene Score (JSD) Function KEGG pathway
1 Sb08g020890 0.00000 short-chain dehydrogenase/reductase (SDR) family protein -
2 Sb02g012020 0.08798 unknown protein -
3 Sb03g034230 0.08937 HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase Glycolysis / Gluconeogenesis Fructose and mannose metabolism Galactose metabolism Starch and sucrose metabolism Amino sugar and nucleotide sugar metabolism Metabolic pathways Biosynthesis of secondary metabolites Carbon metabolism
4 Sb01g041370 0.10282 LIP1 (Light Insensitive Period1); GTPase -
5 Sb10g020530 0.10845 protein phosphatase 2C, putative / PP2C, putative -
6 Sb05g027400 0.11579 -
7 Sb05g019620 0.11705 F-box family protein -
8 Sb03g008990 0.11797 unknown protein -
9 Sb01g003010 0.11840 sugar transporter family protein -
10 Sb03g027290 0.11878 unknown protein -
11 Sb06g001220 0.12029 WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3\'-5\' exonuclease/ nucleic acid binding / protein binding -
12 Sb10g012750 0.12140 -
13 Sb07g025240 0.12262 MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase Synthesis and degradation of ketone bodies Valine, leucine and isoleucine degradation Butanoate metabolism Terpenoid backbone biosynthesis Metabolic pathways Biosynthesis of secondary metabolites
14 Sb03g046475 0.12308 catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase -
15 Sb04g005340 0.12339 -
16 Sb06g019160 0.12383 -
17 Sb05g023110 0.12734 F-box family protein -
18 Sb06g000640 0.12750 oxidoreductase family protein -
19 Sb02g022420 0.12831 delta-8 sphingolipid desaturase, putative -
20 Sb04g009700 0.12841 -


Gene co-expression network
Gene co-expression network
sample Sb08g020890 Sb08g020890 Sb02g012020 Sb02g012020 Sb08g020890--Sb02g012020 Sb03g034230 Sb03g034230 Sb08g020890--Sb03g034230 Sb01g041370 Sb01g041370 Sb08g020890--Sb01g041370 Sb10g020530 Sb10g020530 Sb08g020890--Sb10g020530 Sb05g027400 Sb05g027400 Sb08g020890--Sb05g027400 Sb05g019620 Sb05g019620 Sb08g020890--Sb05g019620 Sb02g012020--Sb10g020530 Sb03g027290 Sb03g027290 Sb02g012020--Sb03g027290 Sb04g009700 Sb04g009700 Sb02g012020--Sb04g009700 Sb02g004580 Sb02g004580 Sb02g012020--Sb02g004580 Sb01g015510 Sb01g015510 Sb02g012020--Sb01g015510 Sb03g034230--Sb02g012020 Sb10g012750 Sb10g012750 Sb03g034230--Sb10g012750 Sb03g046475 Sb03g046475 Sb03g034230--Sb03g046475 Sb06g019160 Sb06g019160 Sb03g034230--Sb06g019160 Sb01g003010 Sb01g003010 Sb03g034230--Sb01g003010 Sb01g041370--Sb10g020530 Sb01g041370--Sb03g027290 Sb02g002703 Sb02g002703 Sb01g041370--Sb02g002703 Sb01g041940 Sb01g041940 Sb01g041370--Sb01g041940 Sb01g043580 Sb01g043580 Sb01g041370--Sb01g043580 Sb01g046380 Sb01g046380 Sb01g041370--Sb01g046380 Sb10g020530--Sb01g041940 Sb02g037100 Sb02g037100 Sb10g020530--Sb02g037100 Sb10g021290 Sb10g021290 Sb10g020530--Sb10g021290 Sb02g006370 Sb02g006370 Sb10g020530--Sb02g006370 Sb02g039500 Sb02g039500 Sb10g020530--Sb02g039500 Sb01g016520 Sb01g016520 Sb10g020530--Sb01g016520 Sb05g027400--Sb01g041370 Sb05g027400--Sb05g019620 Sb05g027400--Sb01g046380 Sb05g007080 Sb05g007080 Sb05g027400--Sb05g007080 Sb07g023750 Sb07g023750 Sb05g027400--Sb07g023750 Sb04g036810 Sb04g036810 Sb05g027400--Sb04g036810 Sb05g019620--Sb07g023750 Sb03g038420 Sb03g038420 Sb05g019620--Sb03g038420 Sb07g001460 Sb07g001460 Sb05g019620--Sb07g001460 Sb02g028900 Sb02g028900 Sb05g019620--Sb02g028900 Sb02g029270 Sb02g029270 Sb05g019620--Sb02g029270
Octagon: transcription factors