Sobic.003G291800


Gene annotaion
Orghologs
FL-cDNA clone
RNA-seq
Find similar expressed genes
Gene co-expression network

Gene annotation
Gene models Sobic.003G291800.1
Synonym Sb03g034230, ATHXK1,GIN2,HXK1
Functional annotation hexokinase, putative, expressed
UniProt C5XJZ6
InterPro
Pfam PF02309
Panther DB PTHR19443
NCBI CDD KOG1369: Hexokinase
KEGG Orthology K00844
EC number 2.7.1.1
Ontology GO:0000166: Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]
GO:0003674: Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions. [GOC:go_curators]
GO:0004340: Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose-6-phosphate. [EC:2.7.1.2]
GO:0004396: Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate. [EC:2.7.1.1]
GO:0005524: Interacting selectively and non-covalently with ATP, adenosine 5\'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]
GO:0005575: The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. [GOC:go_curators]
GO:0005622: The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]
GO:0005623: The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators]
GO:0005634: A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell\'s chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]
GO:0005737: All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]
GO:0005739: A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [ISBN:0198506732]
GO:0005773: A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]
GO:0005774: The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai]
GO:0005886: The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]
GO:0005975: The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]
GO:0006091: The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. [GOC:jl]
GO:0006096: The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, ISBN:0716720094, Wikipedia:Glycolysis]
GO:0007165: The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]
GO:0008150: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. [GOC:go_curators, GOC:isa_complete]
GO:0008219: Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \\apoptotic bodies\\); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo. [GOC:mah, GOC:mtg_apoptosis]
GO:0008270: Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]
GO:0008865: Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate. [EC:2.7.1.4]
GO:0009056: The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684]
GO:0009536: Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684]
GO:0009747: A series of molecular signals mediated by hexose and dependent on the detection of hexokinase. [GOC:mah, GOC:sm]
GO:0010148: Release of water by the plant into the air as water vapor mainly through leaves. [GOC:sm, ISBN:0879015322]
GO:0010182: The process in which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes. [PMID:9014361]
GO:0010255: The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes. [GOC:sm]
GO:0012501: A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell. [GOC:lr, GOC:mtg_apoptosis]
GO:0016020: Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. [GOC:mah, ISBN:0815316194]
GO:0016301: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]
GO:0016310: The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732]
GO:0016740: Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]
GO:0016773: Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl]
GO:0019320: The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:0198506732]
GO:0031307: The component of the mitochondrial outer membrane consisting of the gene products that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer. [GOC:dos, GOC:mah]
GO:0042592: Any biological process involved in the maintenance of an internal steady state. [GOC:jl, ISBN:0395825172]
GO:0043167: Interacting selectively and non-covalently with ions, charged atoms or groups of atoms. [GOC:jl]
GO:0043226: Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. [GOC:go_curators]
GO:0051156: The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
GO:0090332: The process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. [GOC:tb]


Orthologs
TAIR AT4G29130: hexokinase 1
RAP-DB (Rice) OS01G0742500: Similar to Hexokinase. (Os01t0742500-01)
MaizeGDB (Corn) GRMZM5G856653
Brachypodium BRADI4G43820 BRADI2G49460
Barley Traes_3AL_9DA8DD4AC Traes_3B_0A8E88FC6 Traes_3DL_F39C47195
Wheat Potri.007G009300
Populus MLOC_54094


Full-length cDNA clone information
fl-cDNA clone ID and sequence 003_P22.ab1 031_F20.ab1 037_P17.ab1 066_J24.ab1
Gene structure


Expression pattern by RNA-Seq analysis
FPKM plot
Expression pattern on the genome browser


Find similar expressed genes
Top 20 genes with similar expressed profiles
Link to sample list (same order with the figure)

Rank Gene Score (JSD) Function KEGG pathway
1 Sb03g034230 0 hexokinase 1 Glycolysis / Gluconeogenesis Fructose and mannose metabolism Galactose metabolism Starch and sucrose metabolism Amino sugar and nucleotide sugar metabolism Metabolic pathways Biosynthesis of secondary metabolites Carbon metabolism
2 Sb10g012750 0.0828877341586448 Phosphofructokinase family protein -
3 Sb08g020890 0.0893677645061097 NAD(P)-binding Rossmann-fold superfamily protein -
4 Sb03g046475 0.0974258064642667 -
5 Sb02g012020 0.0982567939462098 -
6 Sb06g019160 0.105901044520888 anthranilate synthase beta subunit 1 -
7 Sb01g003010 0.105957269241283 -
8 Sb07g025240 0.106579824620118 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase Synthesis and degradation of ketone bodies Valine, leucine and isoleucine degradation Butanoate metabolism Terpenoid backbone biosynthesis Metabolic pathways Biosynthesis of secondary metabolites
9 Sb09g022000 0.10696930814296 -
10 Sb07g002770 0.111137322266029 tryptophan synthase beta-subunit 2 Glycine, serine and threonine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Metabolic pathways Biosynthesis of secondary metabolites Biosynthesis of amino acids
11 Sb03g037590 0.111438676698517 FAD-dependent oxidoreductase family protein -
12 Sb07g002415 0.111456577331548 F-box/RNI-like superfamily protein -
13 Sb09g004030 0.112005242445612 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein -
14 Sb02g000360 0.11211756958305 -
15 Sb04g005790 0.114876247456809 Myosin heavy chain-related protein -
16 Sb01g050166 0.114992993695889 H(+)-ATPase 9 Oxidative phosphorylation
17 Sb08g004710 0.115058767814542 protein tyrosine phosphatase 1 -
18 Sb02g042100 0.11594386591973 disproportionating enzyme 2 Starch and sucrose metabolism Metabolic pathways
19 Sb03g007760 0.116518413759226 ABC-2 type transporter family protein -
20 Sb01g006510 0.117741183641955 -


Gene co-expression network
Gene co-expression network
sample Sb03g034230 Sb03g034230 Sb10g012750 Sb10g012750 Sb03g034230--Sb10g012750 Sb08g020890 Sb08g020890 Sb03g034230--Sb08g020890 Sb03g046475 Sb03g046475 Sb03g034230--Sb03g046475 Sb02g012020 Sb02g012020 Sb03g034230--Sb02g012020 Sb06g019160 Sb06g019160 Sb03g034230--Sb06g019160 Sb01g003010 Sb01g003010 Sb03g034230--Sb01g003010 Sb10g012750--Sb03g046475 Sb01g041940 Sb01g041940 Sb10g012750--Sb01g041940 Sb09g004030 Sb09g004030 Sb10g012750--Sb09g004030 Sb04g009700 Sb04g009700 Sb10g012750--Sb04g009700 Sb08g004650 Sb08g004650 Sb10g012750--Sb08g004650 Sb08g020890--Sb02g012020 Sb01g041370 Sb01g041370 Sb08g020890--Sb01g041370 Sb10g020530 Sb10g020530 Sb08g020890--Sb10g020530 Sb05g027400 Sb05g027400 Sb08g020890--Sb05g027400 Sb05g019620 Sb05g019620 Sb08g020890--Sb05g019620 Sb03g046475--Sb09g004030 Sb03g046475--Sb08g004650 Sb07g027970 Sb07g027970 Sb03g046475--Sb07g027970 Sb01g050166 Sb01g050166 Sb03g046475--Sb01g050166 Sb03g032200 Sb03g032200 Sb03g046475--Sb03g032200 Sb02g012020--Sb04g009700 Sb02g012020--Sb10g020530 Sb03g027290 Sb03g027290 Sb02g012020--Sb03g027290 Sb02g004580 Sb02g004580 Sb02g012020--Sb02g004580 Sb01g015510 Sb01g015510 Sb02g012020--Sb01g015510 Sb06g019160--Sb10g012750 Sb06g019160--Sb03g046475 Sb06g019160--Sb01g041940 Sb06g019160--Sb01g050166 Sb02g024422 Sb02g024422 Sb06g019160--Sb02g024422 Sb08g001060 Sb08g001060 Sb01g003010--Sb08g001060 Sb01g033230 Sb01g033230 Sb01g003010--Sb01g033230 Sb02g022990 Sb02g022990 Sb01g003010--Sb02g022990 Sb02g029160 Sb02g029160 Sb01g003010--Sb02g029160 Sb06g001220 Sb06g001220 Sb01g003010--Sb06g001220 Sb07g002415 Sb07g002415 Sb01g003010--Sb07g002415
Octagon: transcription factors